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  • No such file or directory: 'CP003033.faa', is there a way to specify the path? Commented Aug 14, 2014 at 21:46
  • @Jeff is that from your script.py? Commented Aug 14, 2014 at 21:47
  • @Jeff do you need to pass file names as well? Commented Aug 14, 2014 at 21:47
  • Yes I need to pass in 2 file names. Commented Aug 14, 2014 at 21:48
  • For example: python myscript.py -a .faa -b .fna Commented Aug 14, 2014 at 21:49