Questions tagged [singularity]
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5 questions
3 votes
1 answer
1k views
how to pass environment variables to singularity exec
I have a BASH pipeline which at a point runs a Singularity container with singularity exec as follows: singularity exec --bind `pwd`:/folder --bind $d:/results <image>.sif <tool_command> -...
- 387
0 votes
1 answer
672 views
Singularity on RHEL-8: failed to connect to dbus
I am using Singularity on RHEL-8. I just upgraded to cgroupsv2 so that I could throttle resource usage. I also delegate CPU controller permissions in my /etc/systemd/system/[email protected]/override....
- 101
0 votes
0 answers
58 views
Singularity sandbox on NAS
We have several machines that we want to run the same Singularity container on. As we already have a NAS mounted by every machine, we thought this would be a good place to store it without the need to ...
- 31
0 votes
1 answer
403 views
Singularity build failure due to groupadd for openssh-client installation
In Singularity when building under fake-root anything Ubuntu based with in %post either apt update -y or apt install -y openssh-client or their apt-get versions or with -f in the definition file fails ...
- 101
3 votes
0 answers
138 views
How to grant group access to a singularity instance
I constructed a singularity/apptainer sif container and I can now start an instance of this container. Is there a way to grant other users (in a group) the right to run the instance ? In short, How ...
- 131